How do you initiate 'play' for the sequence? Is it all coming out of PT?
If you have the MIDI coming out of PT and into the synth they should be in sync.
If you are sending the MIDI out of synth to PT you may need to set the sync source under Options; depends on how you have it all hooked up and where the MIDI signal (song) originates.

Tell us more about how you are hooked up and trying to do this.


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