The only program I know that will do a good job of isolating individual notes of a chord within an audio file is Melodyne Editor, which is expensive. You would be able to take your finished work and 'tame' that loud third of the chord.

Waves Tune is another utility I've used to fix individual notes in an audio file, but it only works on a monophonic source.

I don't use the Audio Chord Wizard because it isn't usually accurate for complex jazz chords. From my experiments, though, the comments about getting the starting beat and the tempo right to get the best results, are correct. In a song of variable tempo, you have to go through the whole song, pressing F8 every beat one.

I did not realize ACW could show individual pitches it detected; thank you, Noel.

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