Remember you have F5 > UserTrack Development settings, it's a bit deep in the dialogs, they should of made it a floating dialog so you can access and play from different sections of the track as you set what they are in the dialog. A lot of dialogs don't let you access the main app while they are open so you need to go in n out. The UserTrack Development are a pain to get in n out of.
You can also create a copy of the wav & SGU for less chance of it over transposing when you use short templates.